Journal Club Sessions (Aug-Nov)

Date	Speaker	Field
29-Aug	Emilie	Phylogeography
05-Sep	Tim	Phylogeny
12-Sep	Ilkser	Population genetics
19-Sep	Catherine	Phylogeny
26-Sep
03-Oct	Amanda	Phylogeography
10-Oct	Carel	Population genetics
17-Oct	Kerry	Phylogeography
24-Oct	Sarita	Population genetics
31-Oct	Miekie	Phylogeny
07-Nov	Paulette	Phylogeography
14-Nov	Sam	Population genetics
21-Nov	Thierry	Phylogeny

Does the geography alone can trigger life history adaptation?

Here the geography represent vicariance events that correspond to a rupture of gene flow of an ancestral single population/species. Does anyone can think of any processes by which such vicariance event alone (without change in habitats or ecology) can induce changes in life history traits such as reproductive startegy, dispersal ability etc.
Any ideas?

How scientists see each other ?

You are more than welcome to share your views ;)

Zanclus samples from Anse des Cascades - 19 July 2011

Because the sea was very rough during the two weeks in Reunion and because we could not be sampling in the marine reserve, this was the only site where we could go to search for the Moorish idol: Anse des Cascades.

And here are the 15 samples we collected with my brother ...

Sampling trip July - Reunion

The past two weeks, Emilie and I have been in holidays in Reunion. But as everyone knows, none of us as biologist can be in real holidays. So, we kept this statement true and we went snorkeling to see cucumber ;). Anyway, here are some pictures we took while "working".

Here is the culprit sea cucumber, Synapta maculata (on right hand side), with its nice tentacles around its mouth. The urchin Diadema setosum with its five characteristic white dots and peacock worm in the top left.

Then we saw some fish like this trumpet fish and this Picasso trigger fish.

This puffer fish that Emilie hunted for a while to get this nice picture!

Also some beautiful fish and others not very nice.

Emilie picked up some ophiuroids also. This one was probably Ophionereis porrecta as you can see.

Who's who? who can say which one is moorish idol and which one is the bannerfish?

And then when we left, we got a very nice surprise (thanks to Emilie's piercing eyes!). Look in the water close to the fishing boat, there are two dark roundish shapes. Who guessed?

Two juveniles of rays at only 3m from the beach!

That was our snorkeling in the reserve area at Etang Sale

Golden Mole field trip

Just a quick update on my field trip:

I have been to Shongweni, Illovo beach and Umkomaas. Tim joined me for the first week at Shongweni and Illovo (thanks Tim!), and Sarita will be joining me next week at Vernon Crookes. Tomorrow I'm headed for Scottburgh.

Mole-catching has proven to be far trickier than I ever imagined! But I can't say I wasn't warned...

I will be back on Saturday 18th if all goes according to plan, so should see you all the following Monday.

Skinks phylogeography in southern Africa

Last monday, Catherine presented an interesting paper presenting phylogeographic data on rock skinks distributed from south Angola to the west part of South Africa. They used an impressive data set representing <1Kb of mitochondrial region and >2.5Kb of nuclear region. Using samples from different regions they could propose a scenario for the colonization history (from north to south) and found some geographical breaks. Moreover, they found signs of hybridization between the lineages. The paper is a good example of phylogeographic studies in the region. Thanks Catherine and sorry for being late!

From PORTIK DM, BAUER AM & JACKMAN TR. Molecular Ecology, 2011, 20: 1744–1748

Title: Bridging the gap: western rock skinks (Trachylepis sulcata) have a short history in South Africa

Abstract

Phylogeographic patterns in wide-ranging species in southern Africa remain largely unexplored, especially in areas north of South Africa. Here, we investigate population structuring, demographic history, and the colonization pattern of the western rock skink (Trachylepis sulcata), a rock-dwelling species with a range extending from southwestern South Africa into Angola. Using 1056 bp from the mitochondrial marker ND2 and > 2.5 kb from three nuclear genes (EXPH5, KIF24, RAG-1), we constructed allele networks, generated extended Bayesian skyline plots and performed population clustering analyses. Analyses of historical demographic patterns show an overall southward range expansion from Northern Namibia into Southern Namibia and South Africa, although we find contrasting genetic breaks across these geographic regions using nuclear and mitochondrial data. We suggest that mtDNA has introgressed across a nuclear break corresponding to the Knersvlakte region of South Africa, a previously proposed biogeographic barrier for rupicolous species. This pattern of mitochondrial variation contrasts sharply to that of other South African taxa previously investigated, which all show significant mtDNA differentiation across the Knersvlakte region. Additionally, while other taxa show divergences dating to the Pliocene, T. sulcata appears to be a recent arrival in southern Africa, having crossed this barrier and colonized South Africa in the mid-Pleistocene. The complex phylogeographic history of T. sulcata corroborates the intricate patterns of genetic variation found in South African taxa and provides novel insight into historical processes affecting species distributed across Namibia.